Can you use RescueTime with mouse and keyboard sharing software?

I have dual machine setup. One is my laptop and one is my desktop. Both of them are dual-boot Mac and Windows.

I have this open source software called Synergy (http://sourceforge.net/projects/syner...) to control both machines from one keyboard and mouse.

Now obviously, the machine that has the Synergy server running has the mouse plugged in and therefor always shows mouse activity even when I am working on the other machine. Is there any way to ignore that somehow?
 
indifferent I’m curious
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