Popups are not working as expected, popup over different empty screen

Popups are not popping up over original screen, they are popping over a new empty screen... so, click a link and the popup rids of current screen, and pops up over some empty screen or something...

In a prior app I never noticed this and I think they worked (popped over same screen they were called from). However, I did elect for that app to not just be an html5 app, where as this app is just an html5 app, if that makes any sense or has any bearing on this issue...

thanks in advance again,

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