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Replicate vs. Refresh for a table with over 15 million rows

We are needing to refresh a table on our backup server once a week with data from SFDC. The table in Question has over 15 million rows in it. What is the best way to update the data on the backup server? Seems like the Refresh times out after 30 minutes. And we've tried Replicate too. This has worked, but now it's also timing out after about 3 hours.
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