How to get same pairing probabilities from dot plot via external tool?
Can someone tell me how to get access to the pairing probability's of a design by using the sequence via an external tool instead of usin...
Conversations
Recent Conversations
Conversations 91 - 105 of 200
How can I get the raw image file for the dot plots?
Hi I have been working on an automated dot plot analysis app for awhile and need to get access to the raw image files used to generate th...
What sequence browsing tools have players developed?
Our lab is working on a better browser and perhaps API for the RNA Mapping Database (RMDB), hosted at Stanford.
As many of you know, ...
API to determine bar codes in use?
Is there an API to determine the bar codes that are in use in the current lab, or only one to test a given bar code? I'm guessing there m...
reducing permutations in botsolver with added control codes
Jnicol has created an app/bot to iterate thorugh permutations of nucloetides to solve eteRNA shapes. I am proposing additional codes for...
Parse Errors with RNA and RNAElement in EternaScript
Found using my test script 4638056
http://eterna.cmu.edu/web/script/4638...
I'm using the builtin parsing tools in classes RNA and R...
EteRNA Class Time - 1st session scheduled 2/5 at 6pm EST
I would like to start class time sessions for players who want to learn more details about the tools and other EteRNA related topics to a...
Blank eterna script pages
In the Eterna Scripts. I noticed pages 25-38 or rather the last half pages are blanks.
The pages are incrementing inspite of it bei...
Pick a fixed width font for the EternaScript output
The EternaScript editor panel uses a fixed width font, but the output window does not. This makes it much more difficult to do things li...
EternaScript Syntax Errors Need Line Numbers
Its 100x more difficult to write code without meaningful feedback from the compiler. Combined with my other issue where syntax errors we...
EternaScript Syntax Error In // Comments.
EternaScript improperly processes //commented out lines
Create an empty script, Evaluate, this leads to no syntax errors.
Now add
...
Save script output
may or may not be useful to be able to have old script output automagically saved
Mullings from chat: Energy function, additional things to help EteRNA, and some other stuff
The chat log here: https://docs.google.com/document/d/11...
This was started as a suggestion of a database tool to help in analysis of...
Mycoplasma genitalium simulation software, interested?
EteRNAvites,
Get the whole cell simulation and note all the RNA steps.
https://wholecell.stanford.edu/
EteRNA Class Time: Basic Javascript
I'm doing a basic Javascript course on this coming Wednesday (3/26/14) at 7 PM EST, or immediately after the dev chat. It'll cover the b...
