Select, Copy, Paste
It would be really cool to selectively copy and paste selected regions of the sequence string. For example, if I had GGGGAAAAAACCCCUUUUUU...
Brourd
Joined on August 8, 2011
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Recently Cobbled RNA-Inverse Algorithms
You know, with the advent of SENT-RNA, NEMO, EternaBrain, etc., those algorithms and their results for the entire database of puzzles sho...
Temperature Switches
I believe in the ViennaRNA package, it's possible to change the temperature that the RNA is folding at. This could be used in the develop...
Revival of the Eterna3D motif assembly game
Hi Everyone, So I've been tinkering around with with the original Eterna 3D motif assembly game, and I was wondering how much players wo...
The Eterna100 With Other Models: A Short Review
The development of the Eterna100 was a triumph in citizen science and Eterna. For those interested, here is a link to the original paper ...
Eternacon 2018 Followup: Finally figuring out the points issue
So as the first follow-up conversation to Eternacon, I believe that the issue of point allocations should be finally put to rest. Mostly ...
Delta Dot plots tool add?
Can we get a change in dot plot (delta dot plot) graph added to the tools? It would make comparisons while making a puzzle a lot easier ...
Thoughts on how to award lab coin for previous labs and future labs
Rhiju asked me to do a sum up of recent chat discussion on how distribute past lab coin. I butchered the chatlog and pulled out what I co...
Puzzles with opposing outputs, for use in diagnostic molecules
Eli and I were exploring new ways to combine good OpenTB A/C and B/C switches into good A*B/C^2 designs when we stumbled on an idea that...
Generation of Riboswitch Design Statistics
Hey guys, I've been working on a high-throughput method of analyzing a riboswitch structure and sequence to generate a list of comparabl...
Coder Required: Secondary Structure Classification of RNA Switches
This post is a call for a coder in the Eterna community to take part in an initiative to classify the predicted secondary structures of t...
UI View Boxes
https://drive.google.com/open?id=1_4OY-hS3b8GROBgnrxTZgEsqETLx4rJr4s7kNXuCL5U UI View Boxes We have been highlighting lab design list...
Help Design the Round 2 Experiments for OpenTB
Following the closing of Round 1 of the OpenTB Challenge, there will be a considerable length of time before the experimental process is ...
New puzzle progression
UPDATE: Now that the site is now live, please continue discussion at the new feedback topic so we can make sure to keep things clean and ...
Call for Open Discussion on Updating the Eterna 'About' page
Hello Eterna players and developers,This is a call for an open discussion on ideas for updating the 'About' page found through the 'Help'...
[Dev Chat Followup] Lab solution bundles, kickstarting collaboration, and making groups useful
This topic is in reference to discussion from developer chat on July 7, 2015, containing a condensed version of the points raised, with t...
Beginner Lab Ideas for the On-Chip Riboswitches
This forum post is meant to gather ideas for hypotheses and lab puzzles for players who have just started playing the game. Given the c...
Make Vienna2 energy model the default for lab puzzles
I've come to the conclusion that of the three available energy models, Vienna2's predictions fit the best with the riboswitch data we're ...
[Strategy Market] [Switch] Elements: Down boost hairpin loops in switching area
Strategy
Penalize end loops that has low energy in loops in hairpins that participate in the switching area.
For hairpin loops in t...
[Strategy Market] [Switch] Helix Composition
First, we'll define a helix with this particular strategy as being a continuous series of consecutive base pairs. For now, all loops will...