Conversations

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About the modeling of binding sites
The purpose of this thread is to inform players about the path I took to create the aptamer models and warn them about my ignorance. Let...
  • nando, 2 years ago

  • 1 me too
  • 0 replies
  • Idea
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Rampant SPAM in player profiles
http://eterna.cmu.edu/web/player/146057/ http://eterna.cmu.edu/web/player/145943/ http://eterna.cmu.edu/web/player/145773/ http://e...
  • 4 me toos
  • 9 replies
  • Idea
Photo of nando
Mutations limits in labs
I may need more coffein or something, or maybe there's currently no way to know how many mutations have been used in those labs that limi...
  • 1 me too
  • 2 replies
  • Problem
  • Solved
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Yesterday's site update
Until yesterday, my lab "New Frontier 2" had the ID 3213788. http://eterna.cmu.edu/web/lab/3213788/ Today, it reads 3376237 http://...
  • 2 me toos
  • 8 replies
  • Problem
  • Not a Problem
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Lab protocols and folding kinetics
I tried to find the answer to my question in the documents listed on the Das Lab page, but couldn't find it. Essentially, I'm interested ...
  • 1 me too
  • 4 replies
  • Question
  • Answered
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Sequences sorting in labs
If I'm not mistaken, sequences in labs can be sorted, and the algorithm currently in use seems to be the Hamming distance. I'd like to...
  • 3 me toos
  • 4 replies
  • Idea
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How to create FMN switch puzzles
With CloudBeta-Switch approaching, I thought it would be possibly helpful if I wrote down a simple technique I recently came up with, whi...
  • 2 me toos
  • 1 reply
  • Article
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Issue with switches
Based on my work with my bot (and previously seen "oddities"), I believe there's an issue in the way that EteRNA handles switches, and if...
  • 1 me too
  • 4 replies
  • Question
  • Answered
Photo of nando
Pairing dot plot
Screenshots from current lab When I consider the very first dot in the bottom left, I read that base 11 pairs with base 61. But ...
  • 1 me too
  • 1 reply
  • Problem
  • Solved