RNA Properties Tool V2.0 now with NUPACK released

  • 2
  • Idea
  • Updated 3 months ago
  • (Edited)
Hello Everyone. I have just finished updating my RNA properties tool to include NUPACK. You can now get a slew of info about a single RNA strand for Vienna 2 (including Ensemble Diverstiy and MFE), as well as NUPACK's MFE and Ensemble Defect. Bellow is a link to the proper installer as well as the source code project in VS 2015.

Installer:
https://www.dropbox.com/s/tyjcpmytv7wmee4/RNA%20Properties%20Tool%20V2.0%20Installer.zip?dl=0

Source Code:
https://www.dropbox.com/s/8bfq9ivdapwyxc4/Vienna%202%20Sequence%20Properties%20Tool-%20working%20installer.zip?dl=0

Respectfully,
Jennifer
Photo of Jennifer Pearl

Jennifer Pearl

  • 203 Posts
  • 31 Reply Likes

Posted 3 months ago

  • 2
Photo of Astromon

Astromon

  • 195 Posts
  • 27 Reply Likes
Thanks jen! i can't wait to utilize this tool!
Photo of Astromon

Astromon

  • 195 Posts
  • 27 Reply Likes
I am having trouble with the installer.
Photo of Jennifer Pearl

Jennifer Pearl

  • 203 Posts
  • 31 Reply Likes
replied in Slack
Photo of DigitalEmbrace

DigitalEmbrace

  • 64 Posts
  • 41 Reply Likes
I have no idea what this is. Do I need to know what this is or is it only relevant for players involved in coding?
Photo of Jennifer Pearl

Jennifer Pearl

  • 203 Posts
  • 31 Reply Likes
This is a app for quickly getting ensemble diversity (Vienna 2) and Ensemble Defect (NUPACK) as well as other values such as MFE. This is relevant for players in labs.