Syncing Low Variables and Version Control question

I've inherited a site that's using Low Variables and I have a question concerning syncing and saving as files.

We're using a git repo to store all site files and have a script that allows us to sync the production database to our local environment. The client primarily makes edits to the production database via the site's control panel.

We're encountering an issue where if the client changes a Low Variable in production and we edit something in templates and deploy, their edits are being replaced with the content of the files saved in the templates. I can see that there's an accommodation for syncing the database to the files, but we need a way to sync our local files to the database content.

Is there a way to do this?
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